Raw vector
CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:N/VI:H/VA:L/SC:N/SI:N/SA:N/E:X/CR:X/IR:X/AR:X/MAV:X/MAC:X/MAT:X/MPR:X/MUI:X/MVC:X/MVI:X/MVA:X/MSC:X/MSI:X/MSA:X/S:X/AU:X/R:X/V:X/RE:X/U:XSummary
CVE-2026-31968 is a high-severity Stack-based Buffer Overflow (CWE-121) vulnerability in Htslib Htslib. Its CVSS base score is 8.8 (High).
Operationally, exploitation aligns with the MITRE ATT&CK technique Exploitation for Privilege Escalation (T1068); ranked at the 34th percentile by exploit likelihood (below the median); it is not currently listed in the CISA KEV catalog.
The strongest mitigations our analysis identified map to SA-11 (Developer Testing and Evaluation) and SI-10 (Information Input Validation) — see the control section below for these in your framework.
Deeper analysis AI-assisted summary
Synthesised by an AI model from the NVD description and linked references — a reading aid, not an authoritative source.
HTSlib, a C library for high-throughput sequencing data storage formats including CRAM, contains a vulnerability in its handling of the VARINT and CONST encodings used in CRAM files for DNA sequence alignment data. Incomplete validation of the encoding context can result in up to eight bytes being written beyond the end of a heap allocation or overwriting a one-byte stack variable, potentially corrupting adjacent variables. This issue manifests as either a heap buffer overflow or stack overflow, affecting applications that use HTSlib to read CRAM files.
A remote attacker can exploit this vulnerability by crafting a malicious CRAM file and tricking a user into opening it with an affected HTSlib-based application, as it requires user interaction but no privileges. Successful exploitation could cause the program to crash, overwrite heap or stack data structures unexpectedly, alter program control flow, or enable arbitrary code execution, with high impact on integrity and availability per its CVSS score of 8.1.
The HTSlib security advisory and associated patch commit detail fixes in versions 1.23.1, 1.22.2, and 1.21.1, which address the validation flaws in VARINT and CONST encoding contexts. No workaround is available, so users should update to a patched version promptly. Relevant resources include the GitHub security advisory at https://github.com/samtools/htslib/security/advisories/GHSA-cgcm-c9r2-p57j and the fixing commit at https://github.com/samtools/htslib/commit/0ec436796eca7b4ce7fcc9b77270c102da29bb2e.
EU & UK References
- 🇪🇺 ENISA EUVD: EUVD-2026-12942
Vulnerability Data
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. For the `VARINT` and `CONST` encodings, incomplete validation of the…
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context in which the encodings were used could result in up to eight bytes being written beyond the end of a heap allocation, or up to eight bytes being written to the location of a one byte variable on the stack, possibly causing the values to adjacent variables to change unexpectedly. Depending on the data stream this could result either in a heap buffer overflow or a stack overflow. If a user opens a file crafted to exploit this issue it could lead to the program crashing, overwriting of data structures on the heap or stack in ways not expected by the program, or changing the control flow of the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
- CWE(s)
Related Threats
MITRE ATT&CK Enterprise Techniques
CVEs Like This One
Affected Assets
Mitigating Controls
Control response
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- 2 hardening rules · 2 OS baselines
V1.4.1V1.5.2V3.2.3V15.3.5
Mitigating Controls (NIST 800-53 r5) AI
Developer testing and analysis can discover stack-buffer overflows before deployment.
Input validation directly stops untrusted data from exceeding stack buffer bounds.
Memory-protection mechanisms limit the ability to execute injected code after a stack overflow.
Requiring documented secure-development standards and tools can mandate bounds-checked coding practices that avoid the weakness.
Secure-engineering principles include bounds-checked coding and safe buffer handling that avoid introducing the flaw.
Mitigating Controls (NIST CSF 2.0) AI
Derived directly from the weakness types (CWEs) cited in the NVD entry via our AI-authored CWE→CSF cross-walk (authority under review) — links open the control.
Secure-development practices directly require bounds checking and safe memory handling that prevent heap overflows.
Vulnerability scanning can discover stack buffer overflows but does not prevent their introduction.
Patching eliminates known instances of the weakness after discovery.
Mitigating Controls (ISO/IEC 27001:2022 Annex A) AI
Derived directly from the weakness types (CWEs) cited in the NVD entry via our AI-authored CWE→ISO cross-walk (authority under review) — links open the control.
Security testing (fuzzing, static analysis) detects stack overflows before release.
Secure SDLC mandates buffer-safety practices that directly prevent stack overflows.
Application security requirements can specify buffer-size and input-validation rules.
Secure architecture principles include memory-safety and least-privilege stack usage.
Secure coding standards explicitly forbid unsafe buffer handling that causes CWE-121.
Change management can enforce review gates that catch unsafe memory operations before deployment.
Hardening callouts derived
Configuration rules from DISA STIG baselines that bear on weaknesses of the type cited by this CVE. Each rule is shown with the relationship its mapping actually records, against the CWE it was authored against. Derived via CVE→CWE over `controls_xwalks` (authoritative rows only; rows rated `none` are excluded).
Oracle Linux 8 (1 rule)
- V-248594 OL 8 must implement address space layout randomization (ASLR) to protect its memory from unauthorized code execution. prevents CWE-121
Oracle Linux 9 (1 rule)
- V-271452 OL 9 must use a Linux Security Module configured to enforce limits on system services. prevents CWE-121